[NeXML]
Rich phyloinformatic dataThe future data exchange standard is here!
NeXML is an exchange standard for representing phyloinformatic data — inspired by the commonly used NEXUS format, but more robust and easier to process.
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nexml subversion repository
Code for the nexml project includes xml schema, parsing and serialization code in various programming languages (now java, perl, python and C++). We store this code on a subversion repository hosted by SourceForge. For instructions on how to check out our code visit the svn instructions page. To get commit access, you'll need a SourceForge account and ask us to be added to the project. Below is a list of the ten most recent commits:
- Adding tests for matrix row implementation (<em>Sun, 5 Feb 2012 14:41:14 GMT</em>)<br/><br/> <table> <tr><td><strong>Modified</strong></td> <td> <a rel="nofollow" target="_blank" href="https://www.codingmonkeys.de/project/svn/trunk/nexml/java/test/org/nexml/model/TestFileParse.java">/trunk/nexml/java/test/org/nexml/model/TestFileParse.java</a></td></tr> <tr><td><strong>Modified</strong></td> <td> <a rel="nofollow" target="_blank" href="https://www.codingmonkeys.de/project/svn/trunk/nexml/java/test/org/nexml/model/TestParseTrees.java">/trunk/nexml/java/test/org/nexml/model/TestParseTrees.java</a></td></tr> <tr><td><strong>Modified</strong></td> <td> <a rel="nofollow" target="_blank" href="https://www.codingmonkeys.de/project/svn/trunk/nexml/java/test/org/nexml/model/TestAnnotationTypes.java">/trunk/nexml/java/test/org/nexml/model/TestAnnotationTypes.java</a></td></tr> <tr><td><strong>Added</strong></td> <td> <a rel="nofollow" target="_blank" href="https://www.codingmonkeys.de/project/svn/trunk/nexml/java/test/org/nexml/model/TestMatrixRows.java">/trunk/nexml/java/test/org/nexml/model/TestMatrixRows.java</a></td></tr> </table> by rvos on Sun, 05 Feb 2012 14:41:14 +0000 [link]
- Adding matrix row implementation (<em>Sun, 5 Feb 2012 14:38:51 GMT</em>)<br/><br/> <table> <tr><td><strong>Modified</strong></td> <td> <a rel="nofollow" target="_blank" href="https://www.codingmonkeys.de/project/svn/trunk/nexml/java/src/org/nexml/model/impl/MolecularMatrixImpl.java">/trunk/nexml/java/src/org/nexml/model/impl/MolecularMatrixImpl.java</a></td></tr> <tr><td><strong>Modified</strong></td> <td> <a rel="nofollow" target="_blank" href="https://www.codingmonkeys.de/project/svn/trunk/nexml/java/src/org/nexml/model/Character.java">/trunk/nexml/java/src/org/nexml/model/Character.java</a></td></tr> <tr><td><strong>Added</strong></td> <td> <a rel="nofollow" target="_blank" href="https://www.codingmonkeys.de/project/svn/trunk/nexml/java/src/org/nexml/model/MatrixRow.java">/trunk/nexml/java/src/org/nexml/model/MatrixRow.java</a></td></tr> <tr><td><strong>Modified</strong></td> <td> <a rel="nofollow" target="_blank" href="https://www.codingmonkeys.de/project/svn/trunk/nexml/java/src/org/nexml/model/impl/ContinuousMatrixImpl.java">/trunk/nexml/java/src/org/nexml/model/impl/ContinuousMatrixImpl.java</a></td></tr> <tr><td><strong>Added</strong></td> <td> <a rel="nofollow" target="_blank" href="https://www.codingmonkeys.de/project/svn/trunk/nexml/java/src/org/nexml/model/impl/MatrixRowImpl.java">/trunk/nexml/java/src/org/nexml/model/impl/MatrixRowImpl.java</a></td></tr> <tr><td><strong>Modified</strong></td> <td> <a rel="nofollow" target="_blank" href="https://www.codingmonkeys.de/project/svn/trunk/nexml/java/src/org/nexml/model/impl/NexmlWritableImpl.java">/trunk/nexml/java/src/org/nexml/model/impl/NexmlWritableImpl.java</a></td></tr> <tr><td><strong>Modified</strong></td> <td> <a rel="nofollow" target="_blank" href="https://www.codingmonkeys.de/project/svn/trunk/nexml/java/src/org/nexml/model/impl/DocumentImpl.java">/trunk/nexml/java/src/org/nexml/model/impl/DocumentImpl.java</a></td></tr> <tr><td><strong>Modified</strong></td> <td> <a rel="nofollow" target="_blank" href="https://www.codingmonkeys.de/project/svn/trunk/nexml/java/src/org/nexml/model/Matrix.java">/trunk/nexml/java/src/org/nexml/model/Matrix.java</a></td></tr> <tr><td><strong>Modified</strong></td> <td> <a rel="nofollow" target="_blank" href="https://www.codingmonkeys.de/project/svn/trunk/nexml/java/src/org/nexml/model/impl/CategoricalMatrixImpl.java">/trunk/nexml/java/src/org/nexml/model/impl/CategoricalMatrixImpl.java</a></td></tr> <tr><td><strong>Modified</strong></td> <td> <a rel="nofollow" target="_blank" href="https://www.codingmonkeys.de/project/svn/trunk/nexml/java/src/org/nexml/model/impl/MatrixCellImpl.java">/trunk/nexml/java/src/org/nexml/model/impl/MatrixCellImpl.java</a></td></tr> <tr><td><strong>Modified</strong></td> <td> <a rel="nofollow" target="_blank" href="https://www.codingmonkeys.de/project/svn/trunk/nexml/java/src/org/nexml/model/impl/MatrixImpl.java">/trunk/nexml/java/src/org/nexml/model/impl/MatrixImpl.java</a></td></tr> </table> by rvos on Sun, 05 Feb 2012 14:38:51 +0000 [link]
- Added setter and getter for about attribute (<em>Fri, 3 Feb 2012 19:07:27 GMT</em>)<br/><br/> <table> <tr><td><strong>Modified</strong></td> <td> <a rel="nofollow" target="_blank" href="https://www.codingmonkeys.de/project/svn/trunk/nexml/java/src/org/nexml/model/NexmlWritable.java">/trunk/nexml/java/src/org/nexml/model/NexmlWritable.java</a></td></tr> <tr><td><strong>Modified</strong></td> <td> <a rel="nofollow" target="_blank" href="https://www.codingmonkeys.de/project/svn/trunk/nexml/java/src/org/nexml/model/impl/NexmlWritableImpl.java">/trunk/nexml/java/src/org/nexml/model/impl/NexmlWritableImpl.java</a></td></tr> </table> by rvos on Fri, 03 Feb 2012 19:07:27 +0000 [link]
- Added getHref() method (<em>Wed, 25 Jan 2012 22:32:34 GMT</em>)<br/><br/> <table> <tr><td><strong>Modified</strong></td> <td> <a rel="nofollow" target="_blank" href="https://www.codingmonkeys.de/project/svn/trunk/nexml/javascript/jsonlib/nexml.js">/trunk/nexml/javascript/jsonlib/nexml.js</a></td></tr> </table> by rvos on Wed, 25 Jan 2012 22:32:34 +0000 [link]
- Oops, need to check for definedness in a different way in JavaScript (<em>Wed, 25 Jan 2012 16:21:10 GMT</em>)<br/><br/> <table> <tr><td><strong>Modified</strong></td> <td> <a rel="nofollow" target="_blank" href="https://www.codingmonkeys.de/project/svn/trunk/nexml/javascript/jsonlib/nexml.js">/trunk/nexml/javascript/jsonlib/nexml.js</a></td></tr> </table> by rvos on Wed, 25 Jan 2012 16:21:10 +0000 [link]
- Added optional parameter for dealing with different XML2JSON mappings (<em>Wed, 25 Jan 2012 16:03:37 GMT</em>)<br/><br/> <table> <tr><td><strong>Modified</strong></td> <td> <a rel="nofollow" target="_blank" href="https://www.codingmonkeys.de/project/svn/trunk/nexml/javascript/jsonlib/nexml.js">/trunk/nexml/javascript/jsonlib/nexml.js</a></td></tr> </table> by rvos on Wed, 25 Jan 2012 16:03:37 +0000 [link]
- Corrected version number in schema documentation (<em>Thu, 19 Jan 2012 15:27:11 GMT</em>)<br/><br/> <table> <tr><td><strong>Modified</strong></td> <td> <a rel="nofollow" target="_blank" href="https://www.codingmonkeys.de/project/svn/trunk/nexml/html/include/overview.html">/trunk/nexml/html/include/overview.html</a></td></tr> </table> by rvos on Thu, 19 Jan 2012 15:27:11 +0000 [link]
- Changed link to updated slide show. (<em>Thu, 19 Jan 2012 15:26:02 GMT</em>)<br/><br/> <table> <tr><td><strong>Modified</strong></td> <td> <a rel="nofollow" target="_blank" href="https://www.codingmonkeys.de/project/svn/trunk/nexml/html/include/footer.tmpl">/trunk/nexml/html/include/footer.tmpl</a></td></tr> </table> by rvos on Thu, 19 Jan 2012 15:26:02 +0000 [link]
- Adding Names On Nodes logo. (<em>Fri, 13 Jan 2012 00:00:00 GMT</em>)<br/><br/> <table> <tr><td><strong>Added</strong></td> <td> <a rel="nofollow" target="_blank" href="https://www.codingmonkeys.de/project/svn/trunk/nexml/html/include/namesonnodes.png">/trunk/nexml/html/include/namesonnodes.png</a></td></tr> </table> by rvos on Fri, 13 Jan 2012 00:00:00 +0000 [link]
- Added Names On Nodes to home page. (<em>Fri, 13 Jan 2012 00:00:00 GMT</em>)<br/><br/> <table> <tr><td><strong>Modified</strong></td> <td> <a rel="nofollow" target="_blank" href="https://www.codingmonkeys.de/project/svn/trunk/nexml/html/include/static/index.tmpl">/trunk/nexml/html/include/static/index.tmpl</a></td></tr> </table> by rvos on Fri, 13 Jan 2012 00:00:00 +0000 [link]