[nexml]
phylogenetic data in xmlThe future data exchange standard is here!
nexml is an exchange standard for representing phylogenetic data — inspired by the commonly used NEXUS format, but more robust and easier to process.
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code
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| Mon Dec 1 17:12:31 2008 —
nexml subversion repository
Code for the nexml project includes xml schema, parsing and serialization code in various programming languages (now java, perl, python and C++). We store this code on a subversion repository hosted by SourceForge. For instructions on how to check out our code visit the svn instructions page. To get commit access, you'll need a SourceForge account and ask us to be added to the project. Below is a list of the ten most recent commits:
- Added a check to make sure mesquite taxa blocks write unique IDs (this is a global setting, IDs are generated in the Taxa constructor). If no unique ID has been generated for the focal taxa block, a new one is generated following the same rules as Mesquite's, i.e. MesquiteTrunk.getUniqueIDBase() + Taxa.totalCreated by rvos on Thu, 20 Nov 2008 20:09:13 -0800 [link]
- Adding dictionary and annotation objects by rvos on Thu, 20 Nov 2008 19:41:20 -0800 [link]
- Refactored field names (mName notation) by rvos on Sat, 08 Nov 2008 03:31:10 -0800 [link]
- Fixed bug in "standard" data validation (which are space-separated integers) by rvos on Sat, 08 Nov 2008 03:30:30 -0800 [link]
- Changed "use" to "require" to turn off spurious errors. by rvos on Fri, 07 Nov 2008 21:06:18 -0800 [link]
- cleanup commmit - no changes by rvos on Fri, 07 Nov 2008 16:00:00 -0800 [link]
- Typo correction. by rvos on Fri, 07 Nov 2008 20:50:28 -0800 [link]
- Switched nexml generation from DOM Elements to simple string buffer by rvos on Fri, 07 Nov 2008 20:36:02 -0800 [link]
- Made mesquite interpreter output whole project objects. by rvos on Fri, 07 Nov 2008 20:34:54 -0800 [link]
- NAMESPACE REFACTORING COMPLETE by rvos on Fri, 07 Nov 2008 16:00:00 -0800 [link]