#NEXUS
[written Tue Jun 02 22:49:45 PDT 2009 by Mesquite  version 2.5+ (build j89) at Eupoa/192.168.1.100 (Rutger Vos)]

BEGIN TAXA;
	TITLE Taxa;
	DIMENSIONS NTAX=3;
	TAXLABELS
		taxon_1 taxon_2 taxon_3 
	;

END;


BEGIN TREES;
	Title Simulated_Trees;
	LINK Taxa = Taxa;
	TRANSLATE
		1 taxon_1,
		2 taxon_2,
		3 taxon_3;
	TREE 'Tree # 1 simulated by Uniform speciation (Yule)' = (3:10.0,(2:6.835623427415595,1:6.835623427415595):3.1643765725844055);

END;


BEGIN NOTES;

	SUPPLEMENTAL   TAXA = Taxa TAXON = 1 NAME = hyperlink STRING = 'http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=9597';
	SUPPLEMENTAL   TAXA = Taxa TAXON = 2 NAME = hyperlink STRING = 'http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=9598';
	SUPPLEMENTAL   TAXA = Taxa TAXON = 3 NAME = hyperlink STRING = 'http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=9606';

END;

Begin MESQUITE;
		MESQUITESCRIPTVERSION 2;
		TITLE AUTO;
		tell ProjectCoordinator;
		getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa;
		tell It;
			setID 0 1582580416063672050;
		endTell;
		getWindow;
		tell It;
			setResourcesState false false 175;
			setPopoutState 400;
			setExplanationSize 0;
			setAnnotationSize 0;
			setFontIncAnnot 0;
			setFontIncExp 0;
			setSize 700 464;
			setLocation 8 22;
			setFont SanSerif;
			setFontSize 10;
		endTell;
		getEmployee  #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord;
		tell It;
			makeTreeWindow #1582580416063672050  #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker;
			tell It;
				suppressEPCResponse;
				setTreeSource  #mesquite.trees.StoredTrees.StoredTrees;
				tell It;
					setTreeBlock 1;
					toggleUseWeights off;
				endTell;
				setAssignedID 922.1243982643382.8828572762160031163;
				getTreeWindow;
				tell It;
					setExplanationSize 30;
					setAnnotationSize 20;
					setFontIncAnnot 0;
					setFontIncExp 0;
					setSize 525 397;
					setLocation 8 22;
					setFont SanSerif;
					setFontSize 10;
					getToolPalette;
					tell It;
						setTool mesquite.ornamental.TaxonLink.TaxonLinkToolExtra.taxonLink;
					endTell;
					setActive;
					getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator;
				tell It;
					suppress;
					setTreeDrawer  #mesquite.trees.DiagonalDrawTree.DiagonalDrawTree;
					tell It;
						setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard;
						tell It;
							stretchToggle off;
							branchLengthsToggle off;
							toggleScale on;
							toggleBroadScale off;
							toggleCenter off;
							toggleEven off;
						endTell;
						setEdgeWidth 12;
						orientUp;
					endTell;
					setBackground White;
					setBranchColor Black;
					showNodeNumbers off;
					showBranchColors on;
					labelBranchLengths off;
					centerBrLenLabels on;
					showBrLensUnspecified on;
					showBrLenLabelsOnTerminals on;
					setBrLenLabelColor 0 0 255;
					setNumBrLenDecimals 6;
					desuppress;
					getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames;
					tell It;
						setColor Black;
						toggleColorPartition on;
						toggleShadePartition off;
						toggleNodeLabels on;
						toggleCenterNodeNames off;
						toggleShowNames on;
						namesAngle ?;
					endTell;
				endTell;
					setTreeNumber 1;
					useSuggestedSize on;
					toggleTextOnTree off;
					showWindow;
				endTell;
				desuppressEPCResponse;
				getEmployee #mesquite.trees.ColorBranches.ColorBranches;
				tell It;
					setColor Red;
					removeColor off;
				endTell;
				getEmployee #mesquite.ornamental.BranchNotes.BranchNotes;
				tell It;
					setAlwaysOn off;
				endTell;
				getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition;
				tell It;
					colorByPartition off;
				endTell;
				getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles;
				tell It;
					setOn on;
					setDigits 4;
					writeAsPercentage off;
					toggleCentred on;
					toggleHorizontal on;
					setFontSize 10;
					setOffset 0  0;
				endTell;
				getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues;
				tell It;
					panelOpen false;
				endTell;
			endTell;
		endTell;
		endTell;
end;