Schema module documentation

| — Last updated: Sun Feb 5 09:43:31 EST 2012

Description

This module defines complex types for OTU objects and their container objects. These types are analogous to the "taxa" block in NEXUS files. They are used in the nexml schema, and in instance documents, to normalize the cardinality between nodes in trees and rows in matrices.

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Complex types

Taxa

Inheritance

Taxa extends IDTagged.

Substructures

• an element called "otu", instance of Taxon (0..unbounded).
• an element called "set", instance of TaxonSet (0..unbounded).

Definition source

  <xs:complexType name="Taxa">
    <xs:complexContent mixed="false">
      <xs:extension base="IDTagged">
        <xs:sequence>
          <xs:element maxOccurs="unbounded" minOccurs="0" name="otu" type="Taxon"/>
          <xs:element maxOccurs="unbounded" minOccurs="0" name="set" type="TaxonSet"/>
        </xs:sequence>
      </xs:extension>
    </xs:complexContent>
  </xs:complexType>

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Taxon

Inheritance

Taxon extends IDTagged.

Definition source

  <xs:complexType name="Taxon" sawsdl:modelReference="http://evolutionaryontology-dev.nescent.org/cdao.owl#TU">
    <xs:complexContent>
      <xs:extension base="IDTagged"/>
    </xs:complexContent>
  </xs:complexType>

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See also

~/nexml/xsd/taxa/taxa.xsd includes the following other files:

• ~/nexml/xsd/abstract.xsd
• ~/nexml/xsd/meta/sets.xsd

~/nexml/xsd/taxa/taxa.xsd is included in:

• ~/nexml/xsd/nexml.xsd

Quick links:

Bindings:

Goings on:

External links

• SF.net project
• EvoInfo wiki
• CDAO
• PhyloWS