nexml - index of /nexml/perl/

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The future data exchange standard is here!

nexml is an exchange standard for representing phylogenetic data — inspired by the commonly used NEXUS format, but more robust and easier to process.

Validate nexml data

Directory listing

~ / nexml / perl
digg reddit del.icio.us facebook | Fri Jul 4 10:06:41 2008 —

This subdirectory contains a release candidate for Bio::Phylo with nexml parser support. Much of the nexml code has been written by Jason Caravas during his Google Summer of Code project, and subsequently tweaked by Rutger Vos.

To build this, you may want to get three optional prerequisites from CPAN first:

And for the nexml extension you must install XML::Twig first.

The code in this subdirectory is released under the standard perl licensing scheme, which is a dual system supplying users a choice between the artistic license and the GNU public license.

Provided you have the prerequisites, you can build this code by issuing:
$ perl Makefile.PL
$ make
Which places the built code in a 'blib' subdirectory of this folder.

To run the test suite (which will fail at this stage of the development), issue:
$ make test
To install (but don't do that just yet, instead point your $PERL5LIB to the lib/ folder), issue:
$ make install

      Name                 Last modified       Size  Description


[DIR] Parent Directory     19-May-2008 13:30      -  Folder
[   ] COPYING              07-Feb-2008 00:28     6k  Software license
[   ] LICENSE              07-Feb-2008 00:28    34k  Software license
[   ] MANIFEST.skip        07-Feb-2008 00:28     1k  Exclude patterns
[   ] Makefile.PL          07-Feb-2008 00:28     1k  Make file
[TXT] build.sh             07-Feb-2008 00:28     1k  Unix shell script
[DIR] lib/                 07-Feb-2008 00:28      -  Folder
[DIR] t/                   07-Feb-2008 00:28      -  Folder